Affine Transform 3D

Affine transformation of 3D image data based on pairs of feature points

IJscript Affine 3D

editing

Description

A javascript to transform 3D image stack based on manually annotated anchor points. This script was written for aligning 3D image stacks from multiple samples.

Input:

  1. A text file with pair of coordinates
  2. Active 3D image stack

Output:

Transformed 3D image stack.

Dependency

Fiji (ImgLib2)

Installation

Download affinetransform3Dv3.js and run the script.

Usages

Repository

https://github.com/miura/ijmacros