XYZ projection

Generates single image with XY, XZ, YZ projections

Description

A visualization utility for 3D volume image data. The plugin does projections in 3 axes and place the projection images in a single image as a set. Original plugin was written by Peter Sebastian Masny and this plugin allows the use from scripts, and also to scale the image differently in z axis according to the setting defined in [Image > Properties].

Input:

An active 3D volume image stack (3D stack).

Output:

A 2D image with three projections, each in x, y and z axis.

ImageJ

Installation

Download the latest release XYZ_MaxProject-1.1.0.jar and place the file under plugin folder in ImageJ / Fiji.

Usages

This plugin appears under [Plugins > EMBLtools > 3D >] as “XYZ Max Projection”. Select this menu, then the active image stack is processed and a new image with projections are created.

scripting

from ij import IJ
from de.embl.cmci import XYZMaxProject
imp = IJ.getImage()
mp = XYZMaxProject(imp)
impxyz = mp.getXYZProject()
impxyz.show()


Repository

Github: XYZ_Projection